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Resources
Software
LD score Haploview is designed to simplify and expedite the process of haplotype analysis by providing a common interface to several tasks relating to such analyses. PLINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner. INRICH is a pathway analysis […]
CODE
We believe in making our code open source. The following GitHub repositories contain genomics tools you may find useful: seqr is a software tool we use for searching for causal variants in Mendelian disease families. LOFTEE is a plugin for the Ensembl Variant Effect Predictor that improves the detection and filtering of candidate protein-truncating variants. […]
